Transcript: lnc-CLTA-1:1

Basic information

LNCipedia transcript ID: lnc-CLTA-1:1 
LNCipedia gene ID: lnc-CLTA-1
Location (hg38): chr9:36307042-36315279
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 504 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015666; ENST00000417311.1; RP11-84P7.2-001; OTTHUMT00000052420.1; NONHSAT131007
Alternative gene names: XLOC_007344; linc-MELK; ENSG00000232214.1; RP11-84P7.2; OTTHUMG00000019903.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.5424 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLTA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLTA-1:1
3.1 lnc-CLTA-1:1
4.0 lnc-CLTA-1:1
4.1 lnc-CLTA-1:1
5.0 lnc-CLTA-1:1
5.1 lnc-RECK-5:1
5.2 lnc-CLTA-1:1