Transcript: lnc-CLSTN2-2:1

Basic information

LNCipedia transcript ID: lnc-CLSTN2-2:1 
LNCipedia gene ID: lnc-CLSTN2-2
Ensembl Gene ID: ENSG00000251471
Ensembl Transcript ID: ENST00000504735
Location (hg38): chr3:139837220-139859894
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 539 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504735; ENST00000504735.1; RP11-166D18.1-001; OTTHUMT00000358480.1; NONHSAT092393
Alternative gene names: ENSG00000251471; RP11-166D18.1; ENSG00000251471.1; OTTHUMG00000159952.1; AC016933.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.6121 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLSTN2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLSTN2-1:1
3.1 lnc-CLSTN2-2:1
4.0 lnc-CLSTN2-2:1
4.1 lnc-CLSTN2-2:1
5.0 lnc-CLSTN2-2:1
5.1 lnc-CLSTN2-2:1
5.2 lnc-CLSTN2-2:1