Transcript: lnc-CLN8-5:2

Basic information

LNCipedia transcript ID: lnc-CLN8-5:2 
LNCipedia gene ID: lnc-CLN8-5
Location (hg38): chr8:1373309-1373945
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 477 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00015205
Alternative gene names: XLOC_006686; linc-DLGAP2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -365.1588 non-coding 
CPAT coding probability 3.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLN8-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DLGAP2-2:2
3.1 lnc-DLGAP2-2:2
4.0 lnc-DLGAP2-2:2
4.1 lnc-DLGAP2-2:2
5.0 lnc-DLGAP2-2:2
5.1 lnc-DEFB106A-105:2
5.2 lnc-CLN8-5:2