Transcript: lnc-CLK4-1:2

Basic information

LNCipedia transcript ID: lnc-CLK4-1:2 
LNCipedia gene ID: lnc-CLK4-1
Location (hg38): chr5:178694720-178707038
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 835 bp
Exons: 5
Sources: Broad Institute
Alternative transcript names: TCONS_00011099
Alternative gene names: XLOC_005102; linc-CLK4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -279.264 non-coding 
CPAT coding probability 97.20% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CLK4-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF354A-1:1
3.1 lnc-ZNF354A-1:1
4.0 lnc-ZNF354A-1:1
4.1 lnc-ZNF354A-1:1
5.0 lnc-ZNF354A-1:1
5.1 lnc-MGAT4B-36:1
5.2 lnc-CLK4-1:2