Transcript: lnc-CLIC5-2:1

Basic information

LNCipedia transcript ID: lnc-CLIC5-2:1 
LNCipedia gene ID: lnc-CLIC5-2
Location (hg38): chr6:45260088-45260568
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 423 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000448320.1; RP11-394I17.1-001; OTTHUMT00000040747.1; NONHSAT112977
Alternative gene names: ENSG00000230554.1; RP11-394I17.1; OTTHUMG00000014771.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -375.6285 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLIC5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLIC5-2:1
4.0 lnc-CLIC5-2:1
4.1 lnc-CLIC5-2:1
5.0 lnc-CLIC5-2:1
5.1 lnc-NFKBIE-24:1
5.2 lnc-CLIC5-2:1