Transcript: lnc-CLEC20A-1:2

Basic information

LNCipedia transcript ID: lnc-CLEC20A-1:2 
LNCipedia gene ID: lnc-CLEC20A-1
Location (hg38): chr1:178495896-178499634
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1137 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT139916; ENST00000445098.2
Alternative gene names: ENSG00000188585.6; LINC00083; FLJ44005; RP4-593C16.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.2485 non-coding 
CPAT coding probability 87.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CLEC20A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANGPTL1-1:2
4.0 LINC00083:2
4.1 LINC00083:2
5.0 LINC00083:2
5.1 lnc-SH2D1B-161:2
5.2 lnc-CLEC20A-1:2