Transcript: lnc-CISD2-4:2

Basic information

LNCipedia transcript ID: lnc-CISD2-4:2 
LNCipedia gene ID: lnc-CISD2-4
Ensembl Gene ID: ENSG00000251577
Ensembl Transcript ID: ENST00000512401
Location (hg38): chr4:103548745-103593417
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 658 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512401.1; RP11-297P16.3-002; OTTHUMT00000363304.2; NONHSAT097637; ENST00000512401.5
Alternative gene names: ENSG00000251577.1; RP11-297P16.3; OTTHUMG00000160991.2; ENSG00000251577.5; AC105460.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.8985 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CISD2-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CISD2-4:2
4.0 lnc-CISD2-4:2
4.1 lnc-CISD2-4:2
5.0 lnc-CISD2-4:2
5.1 lnc-C4orf17-43:2
5.2 lnc-CISD2-4:2