Transcript: lnc-CHST8-1:5

Basic information

LNCipedia transcript ID: lnc-CHST8-1:5 
LNCipedia gene ID: lnc-CHST8-1
Location (hg38): chr19:33795998-33796728
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 406 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026997; NONHSAT064266
Alternative gene names: XLOC_013044; linc-KCTD15


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6349 non-coding 
CPAT coding probability 4.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST8-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCTD15-1:1
3.1 lnc-KCTD15-1:1
4.0 lnc-KCTD15-1:1
4.1 lnc-KCTD15-1:1
5.0 lnc-KCTD15-1:1
5.1 lnc-GPI-22:1
5.2 lnc-CHST8-1:5