Transcript: lnc-CHST12-1:4

Basic information

LNCipedia transcript ID: lnc-CHST12-1:4 
LNCipedia gene ID: lnc-CHST12-1
Location (hg38): chr7:2442574-2448670
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3042 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013320; NONHSAT118802
Alternative gene names: XLOC_005968; linc-LFNG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.2719 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST12-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST12-1:4
3.1 lnc-CHST12-1:4
4.0 lnc-CHST12-1:4
4.1 lnc-CHST12-1:4
5.0 lnc-CHST12-1:4
5.1 lnc-GPER1-57:5
5.2 lnc-CHST12-1:4