Transcript: lnc-CHRNB4-1:2

Basic information

LNCipedia transcript ID: lnc-CHRNB4-1:2 
LNCipedia gene ID: lnc-CHRNB4-1
Location (hg38): chr15:78707970-78727767
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 336 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023746; NONHSAT047593
Alternative gene names: XLOC_011540; linc-CHRNB4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -296.1239 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHRNB4-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS7-1:1
3.1 lnc-ADAMTS7-1:1
4.0 lnc-CHRNB4-1:2
4.1 lnc-CHRNB4-1:2
5.0 lnc-CHRNB4-1:2
5.1 lnc-CHRNA3-8:1
5.2 lnc-CHRNB4-1:2