Transcript: lnc-CHP1-6:1

Basic information

LNCipedia transcript ID: lnc-CHP1-6:1 
LNCipedia gene ID: lnc-CHP1-6
Location (hg38): chr15:41115944-41120617
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4674 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000022734.1|HBMT00000482261.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 39.7245 non-coding 
CPAT coding probability 19.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHP1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC012652.1.1-6:3
5.0 lnc-AC012652.1.1-6:3
5.1 lnc-TMEM62-33:1
5.2 lnc-CHP1-6:1