Transcript: lnc-CHMP2B-1:6

Basic information

LNCipedia transcript ID: lnc-CHMP2B-1:6 
LNCipedia gene ID: lnc-CHMP2B-1
Location (hg38): chr3:87154377-87157800
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1033 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT090685
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.3785 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP2B-1:6 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHMP2B-1:6
4.0 lnc-CHMP2B-1:6
4.1 lnc-CHMP2B-1:6
5.0 lnc-CHMP2B-1:6
5.1 lnc-HTR1F-5:12
5.2 lnc-CHMP2B-1:6