Transcript: lnc-CHID1-1:1

Basic information

LNCipedia transcript ID: lnc-CHID1-1:1 
LNCipedia gene ID: lnc-CHID1-1
Ensembl Gene ID: ENSG00000250397
Ensembl Transcript ID: ENST00000506172
Location (hg38): chr11:856880-859795
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2061 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506172; ENST00000506172.2; RP11-1391J7.1-001; OTTHUMT00000385945.1; NONHSAT017352
Alternative gene names: ENSG00000250397; ENSG00000250397.2; RP11-1391J7.1; OTTHUMG00000165720.1; AP006623.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 77.2034 coding 
CPAT coding probability 36.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHID1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHID1-1:1
3.1 lnc-CHID1-1:1
4.0 lnc-CHID1-1:1
4.1 lnc-CHID1-1:1
5.0 lnc-CHID1-1:1
5.1 lnc-OR52A1-76:1
5.2 lnc-CHID1-1:1