Transcript: lnc-CHFR-3:4

Basic information

LNCipedia transcript ID: lnc-CHFR-3:4 
LNCipedia gene ID: lnc-CHFR-3
Location (hg38): chr12:132822187-132848192
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 581 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000541341.1; RP11-46H11.10-001; OTTHUMT00000397284.7
Alternative gene names: ENSG00000257072.1; RP11-46H11.10; OTTHUMG00000167952.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1569.6005 coding 
CPAT coding probability 35.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHFR-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POLE-1:1
4.0 lnc-CHFR-3:4
4.1 lnc-CHFR-3:4
5.0 lnc-CHFR-3:4
5.1 lnc-ANKLE2-5:4
5.2 lnc-CHFR-3:4