Transcript: lnc-CHD9-4:10

Basic information

LNCipedia transcript ID: lnc-CHD9-4:10 
LNCipedia gene ID: lnc-CHD9-4
Location (hg38): chr16:52547267-52557322
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4222 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000027321.1|MICT00000132442.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -86.9674 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD9-4:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CHD9-4:10
5.0 lnc-CHD9-4:10
5.1 lnc-ADGRG1-114:2
5.2 lnc-CHD9-4:10