Transcript: lnc-CHD1L-5:16

Basic information

LNCipedia transcript ID: lnc-CHD1L-5:16 
LNCipedia gene ID: lnc-CHD1L-5
Location (hg38): chr1:147173379-147210075
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 718 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237188.3|ENST00000606757.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.7641 non-coding 
CPAT coding probability 4.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD1L-5:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CHD1L-5:16
5.0 lnc-CHD1L-5:16
5.1 lnc-FCGR1A-43:13
5.2 lnc-CHD1L-5:16