Transcript: lnc-CHD1L-5:10

Basic information

LNCipedia transcript ID: lnc-CHD1L-5:10 
LNCipedia gene ID: lnc-CHD1L-5
Location (hg38): chr1:147175602-147177740
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2139 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000606152.1
Alternative gene names: ENSG00000271721.1; RP11-337C18.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5662 non-coding 
CPAT coding probability 10.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD1L-5:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHD1L-1:7
4.0 lnc-CHD1L-5:10
4.1 lnc-CHD1L-5:10
5.0 lnc-CHD1L-5:10
5.1 lnc-FCGR1A-43:16
5.2 lnc-CHD1L-5:10