Transcript: lnc-CHAF1B-6:1

Basic information

LNCipedia transcript ID: lnc-CHAF1B-6:1 
LNCipedia gene ID: lnc-CHAF1B-6
Ensembl Gene ID: ENSG00000228107
Ensembl Transcript ID: ENST00000397184
Location (hg38): chr21:36360630-36362040
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 596 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000397184.2; AP000692.9-001; OTTHUMT00000194627.1; NONHSAT081968
Alternative gene names: ENSG00000228107.1; AP000692.9; OTTHUMG00000086612.1; AP000692.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.9698 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHAF1B-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DOPEY2-1:1
4.0 lnc-CHAF1B-6:1
4.1 lnc-CHAF1B-6:1
5.0 lnc-CHAF1B-6:1
5.1 lnc-SIM2-12:1
5.2 lnc-CHAF1B-6:1