Transcript: lnc-CFC1-2:1

Basic information

LNCipedia transcript ID: lnc-CFC1-2:1 
LNCipedia gene ID: lnc-CFC1-2
Ensembl Gene ID: ENSG00000229797
Ensembl Transcript ID: ENST00000448777
Location (hg38): chr2:130743538-130755879
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 706 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448777.1; AC140481.8-001; OTTHUMT00000333654.1; NONHSAT074376
Alternative gene names: ENSG00000229797.1; AC140481.8; OTTHUMG00000154047.1; AC140481.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.5304 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFC1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CFC1-2:1
4.0 lnc-CFC1-2:1
4.1 lnc-CFC1-2:1
5.0 lnc-CFC1-2:1
5.1 lnc-PRSS40B-9:1
5.2 lnc-CFC1-2:1