Transcript: lnc-CFAP74-1:6

Basic information

LNCipedia transcript ID: lnc-CFAP74-1:6 
LNCipedia gene ID: lnc-CFAP74-1
Ensembl Gene ID: ENSG00000233542
Ensembl Transcript ID: ENST00000443930
Location (hg38): chr1:2013213-2015530
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1954 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000074; ENST00000443930.1; RP11-547D24.1-001; OTTHUMT00000098494.1
Alternative gene names: XLOC_000675; linc-KIAA1751-1; ENSG00000233542.1; RP11-547D24.1; OTTHUMG00000041065.1; AL391845.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.0263 non-coding 
CPAT coding probability 3.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP74-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf222-1:1
3.1 lnc-C1orf222-1:1
4.0 lnc-C1orf222-1:1
4.1 lnc-C1orf222-1:1
5.0 lnc-C1orf222-1:1
5.1 lnc-CLSTN1-121:6
5.2 lnc-CFAP74-1:6