Transcript: lnc-CFAP43-1:1

Basic information

LNCipedia transcript ID: lnc-CFAP43-1:1 
LNCipedia gene ID: lnc-CFAP43-1
Location (hg38): chr10:104258383-104258971
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_chen_BX105117_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.6806 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CFAP43-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR96-1:1
4.0 lnc-WDR96-1:1
4.1 lnc-WDR96-1:1
5.0 lnc-WDR96-1:1
5.1 lnc-CPN1-109:1
5.2 lnc-CFAP43-1:1