Transcript: lnc-CEP83-3:2

Basic information

LNCipedia transcript ID: lnc-CEP83-3:2 
LNCipedia gene ID: lnc-CEP83-3
Ensembl Gene ID: ENSG00000258035
Ensembl Transcript ID: ENST00000551029
Location (hg38): chr12:94168006-94176404
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 370 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551029.1; RP11-74K11.2-002; OTTHUMT00000408139.1; NONHSAT029973
Alternative gene names: ENSG00000258035.1; RP11-74K11.2; OTTHUMG00000170237.1; AC123567.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.4719 non-coding 
CPAT coding probability 8.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEP83-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1105G2.3.1-2:2
4.0 lnc-RP11-1105G2.3.1-2:2
4.1 lnc-RP11-1105G2.3.1-2:2
5.0 lnc-RP11-1105G2.3.1-2:2
5.1 lnc-EEA1-26:2
5.2 lnc-CEP83-3:2