Transcript: lnc-CEP57-2:1

Basic information

LNCipedia transcript ID: lnc-CEP57-2:1 
LNCipedia gene ID: lnc-CEP57-2
Ensembl Gene ID: ENSG00000250390
Ensembl Transcript ID: ENST00000511947
Location (hg38): chr11:95482406-95497553
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511947; ENST00000511947.2; RP11-338H14.1-001; OTTHUMT00000395967.1; NONHSAT023779
Alternative gene names: ENSG00000250390; RP11-338H14.1; ENSG00000250390.2; OTTHUMG00000167737.1; AP001790.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 56.3714 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CEP57-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEP57-2:1
3.1 lnc-CEP57-2:1
4.0 lnc-CEP57-2:1
4.1 lnc-CEP57-2:1
5.0 lnc-CEP57-2:1
5.1 lnc-TRIM49C-54:1
5.2 lnc-CEP57-2:1