Transcript: lnc-CENPP-20:27

Basic information

LNCipedia transcript ID: lnc-CENPP-20:27 
LNCipedia gene ID: lnc-CENPP-20
Location (hg38): chr9:92141596-92145110
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000438322; ENST00000438322.1; LINC00475-008; OTTHUMT00000053056.1; NONHSAT133167
Alternative gene names: ENSG00000225511; C9orf44; ENSG00000225511.1; LINC00475; OTTHUMG00000020216.1; ENSG00000225511.2; ENSG00000225511.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.5696 non-coding 
CPAT coding probability 6.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CENPP-20:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CENPP-3:5
3.1 lnc-CENPP-3:5
4.0 LINC00475:7
4.1 LINC00475:7
5.0 LINC00475:7
5.1 lnc-FAM120A-50:27
5.2 lnc-CENPP-20:27