Transcript: lnc-CEMP1-6:2

Basic information

LNCipedia transcript ID: lnc-CEMP1-6:2 
LNCipedia gene ID: lnc-CEMP1-6
Location (hg38): chr16:2456252-2459966
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 789 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000566085.1; RP11-715J22.4-002; OTTHUMT00000435101.1; NONHSAT052110
Alternative gene names: ENSG00000260874.1; RP11-715J22.4; OTTHUMG00000177049.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -246.9912 non-coding 
CPAT coding probability 18.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEMP1-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEMP1-6:2
4.0 lnc-CEMP1-6:2
4.1 lnc-CEMP1-6:2
5.0 lnc-CEMP1-6:2
5.1 lnc-PKMYT1-42:2
5.2 lnc-CEMP1-6:2