Transcript: lnc-CELA3A-5:25

Basic information

LNCipedia transcript ID: lnc-CELA3A-5:25 
LNCipedia gene ID: lnc-CELA3A-5
Location (hg38): chr1:22025511-22030800
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 771 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000420503; ENST00000420503.1; LINC00339-003; OTTHUMT00000096538.1; NONHSAT001464
Alternative gene names: ENSG00000218510; NCRNA00339; ENSG00000218510.3; LINC00339; OTTHUMG00000002757.2; ENSG00000218510.6; HSPC157


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 60.4288 non-coding 
CPAT coding probability 4.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CELA3A-5:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CELA3A-1:2
3.1 lnc-CELA3A-1:2
4.0 LINC00339:19
4.1 LINC00339:19
5.0 LINC00339:19
5.1 lnc-ZBTB40-4:25
5.2 lnc-CELA3A-5:25