Transcript: lnc-CEBPB-13:9

Basic information

LNCipedia transcript ID: lnc-CEBPB-13:9 
LNCipedia gene ID: lnc-CEBPB-13
Ensembl Gene ID: ENSG00000224397
Ensembl Transcript ID: ENST00000422459
Location (hg38): chr20:50276317-50279037
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1058 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422459; ENST00000422459.1; RP11-290F20.3-003; OTTHUMT00000079683.1; NONHSAT080288
Alternative gene names: ENSG00000224397; RP11-290F20.3; ENSG00000224397.1; OTTHUMG00000032721.1; ENSG00000224397.5; LINC01272; ; SMIM25


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.9858 non-coding 
CPAT coding probability 37.06% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CEBPB-13:9 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEBPB-5:3
3.1 lnc-CEBPB-5:3
4.0 LINC01272:4
4.1 LINC01272:4
5.0 LINC01272:4
5.1 lnc-SNAI1-14:9
5.2 lnc-CEBPB-13:9