Transcript: lnc-CEACAM20-2:1

Basic information

LNCipedia transcript ID: lnc-CEACAM20-2:1 
LNCipedia gene ID: lnc-CEACAM20-2
Location (hg38): chr19:44744001-44748381
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4223 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000041149.1|HBMT00000739347.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.5511 non-coding 
CPAT coding probability 2.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CEACAM20-2:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZNF180-2:2
5.0 lnc-ZNF180-2:2
5.1 lnc-GPR4-23:1
5.2 lnc-CEACAM20-2:1