Transcript: lnc-CDPF1-1:2

Basic information

LNCipedia transcript ID: lnc-CDPF1-1:2 
LNCipedia gene ID: lnc-CDPF1-1
Location (hg38): chr22:46227989-46688188
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1572 bp
Exons: 4
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000509577
Alternative gene names: ENSG00000249062


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1742 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDPF1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C22orf40-1:1
3.1 lnc-C22orf40-1:1
4.0 lnc-C22orf40-1:1
4.1 lnc-C22orf40-1:1
5.0 lnc-C22orf40-1:1
5.1 lnc-CDPF1-1:1
5.2 lnc-CDPF1-1:2