Transcript: lnc-CDK20-1:3

Basic information

LNCipedia transcript ID: lnc-CDK20-1:3 
LNCipedia gene ID: lnc-CDK20-1
Ensembl Gene ID: ENSG00000214888
Ensembl Transcript ID: ENST00000399186
Location (hg38): chr9:87857015-87859399
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2014 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000399186.2; XXyac-YM21GA2.7-001; OTTHUMT00000397578.1; NONHSAT132879
Alternative gene names: ENSG00000214888.2; XXyac-YM21GA2.7; OTTHUMG00000168028.1; AL772337.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 72.4879 coding 
CPAT coding probability 95.40% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CDK20-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDK20-2:1
4.0 lnc-CDK20-1:3
4.1 lnc-CDK20-1:3
5.0 lnc-CDK20-1:3
5.1 lnc-SEMA4D-41:3
5.2 lnc-CDK20-1:3