Transcript: lnc-CDH5-22:1

Basic information

LNCipedia transcript ID: lnc-CDH5-22:1 
LNCipedia gene ID: lnc-CDH5-22
Location (hg38): chr16:63695163-63696321
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 866 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_1346_chr16:63729066-63730225_ovary
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -230.0968 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH5-22:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH5-22:1
4.0 lnc-CDH5-22:1
4.1 lnc-CDH5-22:1
5.0 lnc-CDH5-22:1
5.1 lnc-NOL3-63:1
5.2 lnc-CDH5-22:1