Transcript: lnc-CDH5-14:1

Basic information

LNCipedia transcript ID: lnc-CDH5-14:1 
LNCipedia gene ID: lnc-CDH5-14
Ensembl Gene ID: ENSG00000231589
Ensembl Transcript ID: ENST00000415422
Location (hg38): chr16:62596372-62598449
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00024292; ENST00000415422; ENST00000415422.1; AC009110.1-001; OTTHUMT00000316376.1; NONHSAT142930
Alternative gene names: XLOC_011748; linc-CDH5-7; ENSG00000231589; AC009110.1; ENSG00000231589.1; OTTHUMG00000150106.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.1171 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH5-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH5-8:1
3.1 lnc-CDH5-14:1
4.0 lnc-CDH5-14:1
4.1 lnc-CDH5-14:1
5.0 lnc-CDH5-14:1
5.1 lnc-NOL3-66:1
5.2 lnc-CDH5-14:1