Transcript: lnc-CDH12-1:1

Basic information

LNCipedia transcript ID: lnc-CDH12-1:1 
LNCipedia gene ID: lnc-CDH12-1
Location (hg38): chr5:21323836-21341375
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5491 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00009617; ENST00000503488; ENST00000503488.1; RP11-374A4.1-001; OTTHUMT00000368633.1; NONHSAT100711
Alternative gene names: XLOC_004752; linc-CDH18-1; ENSG00000249359; RP11-374A4.1; ENSG00000249359.1; OTTHUMG00000162363.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.1209 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH12-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH12-1:1
3.1 lnc-CDH12-1:1
4.0 lnc-CDH12-1:1
4.1 lnc-CDH12-1:1
5.0 lnc-CDH12-1:1
5.1 lnc-CDH12-1:1
5.2 lnc-CDH12-1:1