Transcript: lnc-CDC42SE1-1:1

Basic information

LNCipedia transcript ID: lnc-CDC42SE1-1:1 
LNCipedia gene ID: lnc-CDC42SE1-1
Location (hg38): chr1:151059519-151070325
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 582 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000439374.1; RP11-316M1.11-001; OTTHUMT00000085104.1; NONHSAT006356
Alternative gene names: ENSG00000242557.1; RP11-316M1.11; OTTHUMG00000035161.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.1834 non-coding 
CPAT coding probability 8.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CDC42SE1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDC42SE1-1:1
4.0 lnc-CDC42SE1-1:1
4.1 lnc-CDC42SE1-1:1
5.0 lnc-CDC42SE1-1:1
5.1 lnc-CDC42SE1-1:1
5.2 lnc-CDC42SE1-1:1