Transcript: lnc-CD83-5:2

Basic information

LNCipedia transcript ID: lnc-CD83-5:2 
LNCipedia gene ID: lnc-CD83-5
Location (hg38): chr6:14661357-14662426
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011705; NONHSAT107856
Alternative gene names: XLOC_005183; linc-JARID2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.0347 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD83-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD83-5:2
3.1 lnc-CD83-5:2
4.0 lnc-CD83-5:2
4.1 lnc-CD83-5:2
5.0 lnc-CD83-5:2
5.1 lnc-GMNN-75:7
5.2 lnc-CD83-5:2