Transcript: lnc-CD58-4:3

Basic information

LNCipedia transcript ID: lnc-CD58-4:3 
LNCipedia gene ID: lnc-CD58-4
Location (hg38): chr1:116240838-116242062
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 438 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT005409; FPKM1_group_1290_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.5195 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD58-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP1A1OS-4:2
4.0 lnc-ATP1A1OS-4:2
4.1 lnc-ATP1A1OS-4:2
5.0 lnc-ATP1A1OS-4:2
5.1 lnc-CD58-8:2
5.2 lnc-CD58-4:3