Transcript: lnc-CD47-1:2

Basic information

LNCipedia transcript ID: lnc-CD47-1:2 
LNCipedia gene ID: lnc-CD47-1
Location (hg38): chr3:108013987-108039093
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4004 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006601; NONHSAT091074
Alternative gene names: XLOC_003209; linc-CBLB-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.4163 non-coding 
CPAT coding probability 56.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CD47-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-1:2
3.1 lnc-CD47-1:2
4.0 lnc-CD47-1:2
4.1 lnc-CD47-1:2
5.0 lnc-CD47-1:2
5.1 lnc-IFT57-3:2
5.2 lnc-CD47-1:2