Transcript: lnc-CD44-7:5

Basic information

LNCipedia transcript ID: lnc-CD44-7:5 
LNCipedia gene ID: lnc-CD44-7
Location (hg38): chr11:35082838-35085715
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2878 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000002023.1|ENCT00000065928.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -94.0205 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD44-7:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CD44-7:5
5.0 lnc-CD44-7:5
5.1 lnc-CAPRIN1-20:4
5.2 lnc-CD44-7:5