Transcript: lnc-CD300LG-2:1

Basic information

LNCipedia transcript ID: lnc-CD300LG-2:1 
LNCipedia gene ID: lnc-CD300LG-2
Ensembl Gene ID: ENSG00000267420
Ensembl Transcript ID: ENST00000592842
Location (hg38): chr17:43927563-43932622
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 521 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053885; ENST00000592842.1
Alternative gene names: ENSG00000267420.1; RP11-527L4.6; AC007993.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.798 non-coding 
CPAT coding probability 50.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CD300LG-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-527L4.2.1-2:1
4.0 lnc-RP11-527L4.2.1-2:1
4.1 lnc-RP11-527L4.2.1-2:1
5.0 lnc-RP11-527L4.2.1-2:1
5.1 lnc-DHX8-9:1
5.2 lnc-CD300LG-2:1