Transcript: lnc-CD180-2:2

Basic information

LNCipedia transcript ID: lnc-CD180-2:2 
LNCipedia gene ID: lnc-CD180-2
Ensembl Gene ID: ENSG00000250978
Ensembl Transcript ID: ENST00000508512
Location (hg38): chr5:67463809-67475477
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508512; ENST00000508512.1; RP11-357D18.1-001; OTTHUMT00000368626.1; NONHSAT101809; ENST00000508512.5
Alternative gene names: ENSG00000250978; RP11-357D18.1; ENSG00000250978.1; OTTHUMG00000162358.1; ENSG00000250978.5; AC079467.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.2365 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD180-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD180-1:2
3.1 lnc-CD180-2:2
4.0 lnc-CD180-2:2
4.1 lnc-CD180-2:2
5.0 lnc-CD180-2:2
5.1 lnc-TRIM23-23:2
5.2 lnc-CD180-2:2