Transcript: lnc-CCSER2-2:4

Basic information

LNCipedia transcript ID: lnc-CCSER2-2:4 
LNCipedia gene ID: lnc-CCSER2-2
RefSeq ID: NR_120670
Location (hg38): chr10:85432863-85448956
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2667 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120670; NR_120670.1
Alternative gene names: LOC101929662


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -46.4321 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSER2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM190B-2:5
4.0 lnc-FAM190B-2:5
4.1 lnc-FAM190B-2:5
5.0 lnc-FAM190B-2:5
5.1 lnc-SMC3-332:4
5.2 lnc-CCSER2-2:4