Transcript: lnc-CCSER2-2:3

Basic information

LNCipedia transcript ID: lnc-CCSER2-2:3 
LNCipedia gene ID: lnc-CCSER2-2
Ensembl Gene ID: ENSG00000224504
Ensembl Transcript ID: ENST00000435367
Location (hg38): chr10:85432863-85448961
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2672 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT015342; ENST00000435367.2
Alternative gene names: ENSG00000224504.2; RP11-475D12.2; AC025428.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.4321 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSER2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM190B-2:4
4.0 lnc-FAM190B-2:4
4.1 lnc-FAM190B-2:4
5.0 lnc-FAM190B-2:4
5.1 lnc-SMC3-332:3
5.2 lnc-CCSER2-2:3