Transcript: lnc-CCSER2-2:1

Basic information

LNCipedia transcript ID: lnc-CCSER2-2:1 
LNCipedia gene ID: lnc-CCSER2-2
Location (hg38): chr10:85432863-85444928
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017849; ENST00000435367; ENST00000435367.1; RP11-475D12.2-001; OTTHUMT00000049143.1; NONHSAT139986
Alternative gene names: XLOC_008539; linc-OPN4-4; ENSG00000224504; RP11-475D12.2; ENSG00000224504.1; OTTHUMG00000018646.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.4321 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSER2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM190B-2:1
3.1 lnc-FAM190B-2:1
4.0 lnc-FAM190B-2:1
4.1 lnc-FAM190B-2:1
5.0 lnc-FAM190B-2:1
5.1 lnc-SMC3-332:1
5.2 lnc-CCSER2-2:1