Transcript: lnc-CCSAP-2:1

Basic information

LNCipedia transcript ID: lnc-CCSAP-2:1 
LNCipedia gene ID: lnc-CCSAP-2
Ensembl Gene ID: ENSG00000233920
Ensembl Transcript ID: ENST00000430677
Location (hg38): chr1:229223461-229227562
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 792 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000750; ENST00000430677.1; RP5-1061H20.5-001; OTTHUMT00000091837.1; NONHSAT010068
Alternative gene names: XLOC_001244; linc-HIST3H2A-4; ENSG00000233920.1; RP5-1061H20.5; OTTHUMG00000037661.1; AL162595.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.1869 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSAP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf96-1:1
3.1 lnc-C1orf96-2:1
4.0 lnc-C1orf96-2:1
4.1 lnc-C1orf96-2:1
5.0 lnc-C1orf96-2:1
5.1 lnc-TRIM17-25:1
5.2 lnc-CCSAP-2:1