Transcript: lnc-CCKAR-2:1

Basic information

LNCipedia transcript ID: lnc-CCKAR-2:1 
LNCipedia gene ID: lnc-CCKAR-2
Ensembl Gene ID: ENSG00000251080
Ensembl Transcript ID: ENST00000506878
Location (hg38): chr4:27133996-27140051
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007734; ENST00000506878; ENST00000506878.1; RP11-415C15.1-001; OTTHUMT00000365733.1; NONHSAT095896
Alternative gene names: XLOC_003913; linc-CCKAR-10; ENSG00000251080; RP11-415C15.1; ENSG00000251080.1; OTTHUMG00000161693.1; AC024132.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.4436 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCKAR-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCKAR-2:1
3.1 lnc-CCKAR-2:1
4.0 lnc-CCKAR-2:1
4.1 lnc-CCKAR-2:1
5.0 lnc-CCKAR-2:1
5.1 lnc-AFAP1-153:1
5.2 lnc-CCKAR-2:1