Transcript: lnc-CCKAR-1:4

Basic information

LNCipedia transcript ID: lnc-CCKAR-1:4 
LNCipedia gene ID: lnc-CCKAR-1
Ensembl Gene ID: ENSG00000240005
Ensembl Transcript ID: ENST00000472346
Location (hg38): chr4:26859809-26860244
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 327 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007733; ENST00000472346.1; RP11-293A21.1-003; OTTHUMT00000356868.1; NONHSAT095892
Alternative gene names: XLOC_003912; linc-CCKAR-11; ENSG00000240005.1; RP11-293A21.1; OTTHUMG00000159680.2; ENSG00000240005.5; AC106047.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.2619 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCKAR-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCKAR-1:4
3.1 lnc-CCKAR-1:4
4.0 lnc-CCKAR-1:4
4.1 lnc-CCKAR-1:4
5.0 lnc-CCKAR-1:4
5.1 lnc-AFAP1-150:12
5.2 lnc-CCKAR-1:4