Transcript: lnc-CCKAR-14:1

Basic information

LNCipedia transcript ID: lnc-CCKAR-14:1 
LNCipedia gene ID: lnc-CCKAR-14
Ensembl Gene ID: ENSG00000251410
Ensembl Transcript ID: ENST00000509666
Location (hg38): chr4:27967723-27985063
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 600 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007737; ENST00000509666; ENST00000509666.1; AC007106.1-001; OTTHUMT00000365735.1; NONHSAT095906
Alternative gene names: XLOC_003916; linc-CCKAR-9; ENSG00000251410; AC007106.1; ENSG00000251410.1; OTTHUMG00000161695.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.7645 non-coding 
CPAT coding probability 5.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCKAR-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-180C1.1.1-1:1
3.1 lnc-RP11-180C1.1.1-1:1
4.0 lnc-RP11-180C1.1.1-1:1
4.1 lnc-RP11-180C1.1.1-1:1
5.0 lnc-RP11-180C1.1.1-1:1
5.1 lnc-GABRA4-90:1
5.2 lnc-CCKAR-14:1