Transcript: lnc-CCDC90B-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC90B-1:1 
LNCipedia gene ID: lnc-CCDC90B-1
Ensembl Gene ID: ENSG00000254551
Ensembl Transcript ID: ENST00000531869
Location (hg38): chr11:83209431-83213379
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 766 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531869.1; RP11-727A23.7-001; OTTHUMT00000392939.1; NONHSAT023400
Alternative gene names: ENSG00000254551.1; RP11-727A23.7; OTTHUMG00000167077.1; AP000873.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4505 non-coding 
CPAT coding probability 25.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC90B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC90B-1:1
4.0 lnc-CCDC90B-1:1
4.1 lnc-CCDC90B-1:1
5.0 lnc-CCDC90B-1:1
5.1 lnc-RAB30-7:1
5.2 lnc-CCDC90B-1:1