Transcript: lnc-CCDC85A-2:1

Basic information

LNCipedia transcript ID: lnc-CCDC85A-2:1 
LNCipedia gene ID: lnc-CCDC85A-2
Ensembl Gene ID: ENSG00000272180
Ensembl Transcript ID: ENST00000606639
Location (hg38): chr2:55952158-56181652
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1275 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT070811; ENST00000606639.1
Alternative gene names: ENSG00000272180.1; RP11-481J13.1; AC011306.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.6317 non-coding 
CPAT coding probability 4.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC85A-2:1 no no no no

Available literature

  1. Sun (2015), A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC85A-2:1
4.0 lnc-CCDC85A-2:1
4.1 lnc-CCDC85A-2:1
5.0 lnc-CCDC85A-2:1
5.1 lnc-PAPOLG-62:4
5.2 lnc-CCDC85A-2:1