Transcript: lnc-CCDC28A-1:9

Basic information

LNCipedia transcript ID: lnc-CCDC28A-1:9 
LNCipedia gene ID: lnc-CCDC28A-1
Location (hg38): chr6:138696047-138697629
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1583 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1797:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -95.2835 non-coding 
CPAT coding probability 27.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC28A-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CCDC28A-1:9
4.1 lnc-CCDC28A-1:9
5.0 lnc-CCDC28A-1:9
5.1 lnc-GJE1-28:15
5.2 lnc-CCDC28A-1:9